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| First Round Draft Pick History |
| 1 | 5 | 5 | 2001 | Annual Draft | P | Carlos | Zambrano | MLB |
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| 1 | 6 | 6 | 2000 | Annual Draft | 2B | Michael | Young | MLB |
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| 1 | 3 | 3 | 1999 | Annual Draft | P | Freddy R. | Garcia | MLB |
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| 1 | 7 | 7 | 1998 | Annual Draft | 3B | Troy | Glaus | MLB |
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| 1 | 15 | 15 | 1998 | Annual Draft | SS+ | Placido | Polanco | MLB |
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| 1 | 23 | 23 | 1998 | Annual Draft | OF | Randy | Winn | MLB |
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| 1 | 13 | 13 | 1997 | Annual Draft | 1B | Derrek | Lee | MLB |
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| 1 | 20 | 20 | 1996 | Annual Draft | 1B | Dmitri | Young | MLB |
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| 1 | 23 | 23 | 1996 | Annual Draft | P | Miguel | Batista | MLB |
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| 1 | 8 | 8 | 1995 | Inaugural Draft | P | Greg | Maddux | MLB |
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| Complete Draft History |
| 1 | 5 | 5 | 2001 | Annual Draft | P | Carlos | Zambrano | MLB |
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| 2 | 3 | 27 | 2001 | Annual Draft | OF | Brad | Wilkerson | MLB |
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| 3 | 3 | 51 | 2001 | Annual Draft | C | Jason | Phillips | MLB |
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| 4 | 3 | 75 | 2001 | Annual Draft | P | Victor | Santos | MLB |
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| 1 | 6 | 6 | 2000 | Annual Draft | 2B | Michael | Young | MLB |
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| 2 | 4 | 28 | 2000 | Annual Draft | P | Jason | Marquis | MLB |
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| 3 | 4 | 52 | 2000 | Annual Draft | P | Randy | Choate | MLB |
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| 3 | 24 | 72 | 2000 | Annual Draft | OF | Tike | Redman | MLB |
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| 4 | 4 | 76 | 2000 | Annual Draft | P | Rocky | Biddle | MLB |
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| 5 | 4 | 100 | 2000 | Annual Draft | C | Gary | Bennett | MLB |
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| 6 | 4 | 124 | 2000 | Annual Draft | 2B+ | David | Newhan | MLB |
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| 1 | 3 | 3 | 1999 | Annual Draft | P | Freddy R. | Garcia | MLB |
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| 2 | 6 | 30 | 1999 | Annual Draft | OF | Gary | Matthews | MLB |
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| 2 | 18 | 42 | 1999 | Annual Draft | P | Damaso | Marte | MLB |
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| 3 | 6 | 54 | 1999 | Annual Draft | P | Scott | Sauerbeck | MLB |
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| 4 | 6 | 78 | 1999 | Annual Draft | P | Jim | Brower | MLB |
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| 5 | 6 | 102 | 1999 | Annual Draft | 2B+ | David | Newhan | MLB |
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| 6 | 6 | 126 | 1999 | Annual Draft | SS+ | Chris | Woodward | MLB |
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| 1 | 7 | 7 | 1998 | Annual Draft | 3B | Troy | Glaus | MLB |
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| 1 | 15 | 15 | 1998 | Annual Draft | SS+ | Placido | Polanco | MLB |
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| 1 | 23 | 23 | 1998 | Annual Draft | OF | Randy | Winn | MLB |
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| 2 | 15 | 39 | 1998 | Annual Draft | P | Chad | Bradford | MLB |
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| 3 | 15 | 63 | 1998 | Annual Draft | P | Jason | Johnson | MLB |
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| 4 | 15 | 87 | 1998 | Annual Draft | 3B | Wes | Helms | MLB |
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| 5 | 15 | 111 | 1998 | Annual Draft | P | Rich | Croushore | MLB |
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| 1 | 13 | 13 | 1997 | Annual Draft | 1B | Derrek | Lee | MLB |
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| 2 | 13 | 37 | 1997 | Annual Draft | P | John | Thomson | MLB |
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| 3 | 13 | 61 | 1997 | Annual Draft | 1B+ | Henry | Blanco | MLB |
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| 4 | 13 | 85 | 1997 | Annual Draft | P | Carlos | Castillo | MLB |
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| 5 | 13 | 109 | 1997 | Annual Draft | P | Wayne | Gomes | MLB |
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| 6 | 13 | 133 | 1997 | Annual Draft | C | Kevin L. | Brown | MLB |
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| 7 | 13 | 157 | 1997 | Annual Draft | P | Ken | Robinson | MLB |
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| 1 | 20 | 20 | 1996 | Annual Draft | 1B | Dmitri | Young | MLB |
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| 1 | 23 | 23 | 1996 | Annual Draft | P | Miguel | Batista | MLB |
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| 2 | 20 | 44 | 1996 | Annual Draft | C+ | Tyler | Houston | MLB |
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| 3 | 20 | 68 | 1996 | Annual Draft | C | Doug | Mirabelli | MLB |
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| 4 | 20 | 92 | 1996 | Annual Draft | P | Esteban | Yan | MLB |
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| 4 | 23 | 95 | 1996 | Annual Draft | OF | Angel | Echevarria | MLB |
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| 5 | 20 | 116 | 1996 | Annual Draft | 2B+ | Felipe | Crespo | MLB |
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| 6 | 20 | 140 | 1996 | Annual Draft | P | Calvin | Maduro | MLB |
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| 7 | 20 | 164 | 1996 | Annual Draft | C | Marcus | Jensen | MLB |
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| 8 | 20 | 188 | 1996 | Annual Draft | OF | Terry | Jones | MLB |
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| 1 | 8 | 8 | 1995 | Inaugural Draft | P | Greg | Maddux | MLB |
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| 2 | 17 | 41 | 1995 | Inaugural Draft | OF | Albert | Belle | MLB |
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| 3 | 8 | 56 | 1995 | Inaugural Draft | P | Hideo | Nomo | MLB |
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| 4 | 17 | 89 | 1995 | Inaugural Draft | 1B | Tino | Martinez | MLB |
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| 5 | 8 | 104 | 1995 | Inaugural Draft | 3B+ | Bobby | Bonilla | MLB |
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| 6 | 17 | 137 | 1995 | Inaugural Draft | P | Jason | Isringhausen | MLB |
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| 7 | 8 | 152 | 1995 | Inaugural Draft | SS | Mike | Bordick | MLB |
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| 8 | 17 | 185 | 1995 | Inaugural Draft | 2B | Delino | DeShields | MLB |
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| 9 | 8 | 200 | 1995 | Inaugural Draft | P | Steve | Reed | MLB |
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| 10 | 17 | 233 | 1995 | Inaugural Draft | C | Chris | Hoiles | MLB |
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| 11 | 8 | 248 | 1995 | Inaugural Draft | P | Tom | Candiotti | MLB |
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| 12 | 17 | 281 | 1995 | Inaugural Draft | OF+ | Stan | Javier | MLB |
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| 13 | 8 | 296 | 1995 | Inaugural Draft | P | Scott | Kamieniecki | MLB |
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| 14 | 17 | 329 | 1995 | Inaugural Draft | OF+ | Joe | Carter | MLB |
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| 15 | 8 | 344 | 1995 | Inaugural Draft | P | Ricky | Bottalico | MLB |
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| 16 | 17 | 377 | 1995 | Inaugural Draft | P | Tony | Castillo | MLB |
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| 17 | 8 | 392 | 1995 | Inaugural Draft | SS+ | Jeff | Reboulet | MLB |
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| 18 | 17 | 425 | 1995 | Inaugural Draft | SS+ | Luis | Sojo | MLB |
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| 19 | 8 | 440 | 1995 | Inaugural Draft | P | Armando | Reynoso | MLB |
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| 20 | 17 | 473 | 1995 | Inaugural Draft | OF | Darren | Lewis | MLB |
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| 21 | 8 | 488 | 1995 | Inaugural Draft | C | Kelly | Stinnett | MLB |
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| 22 | 17 | 521 | 1995 | Inaugural Draft | P | Mike | Bielecki | MLB |
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| 23 | 8 | 536 | 1995 | Inaugural Draft | OF | Jacob | Brumfield | MLB |
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| 24 | 17 | 569 | 1995 | Inaugural Draft | OF+ | Jack | Voigt | MLB |
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| 25 | 8 | 584 | 1995 | Inaugural Draft | P | Mike | Oquist | MLB |
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| 26 | 17 | 617 | 1995 | Inaugural Draft | P | Dean | Hartgraves | MLB |
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| 27 | 8 | 632 | 1995 | Inaugural Draft | P | Ariel | Prieto | MLB |
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| 28 | 17 | 665 | 1995 | Inaugural Draft | OF | Ruben | Amaro | MLB |
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| 29 | 8 | 680 | 1995 | Inaugural Draft | P | Doug | Johns | MLB |
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| 30 | 17 | 713 | 1995 | Inaugural Draft | 3B+ | Juan | Castro | MLB |
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| 31 | 8 | 728 | 1995 | Inaugural Draft | 2B+ | Matt | Franco | MLB |
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| 32 | 17 | 761 | 1995 | Inaugural Draft | 1B+ | J.R. | Phillips | MLB |
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| 33 | 8 | 776 | 1995 | Inaugural Draft | 2B+ | Billy | Ripken | MLB |
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| 34 | 17 | 809 | 1995 | Inaugural Draft | 1B | Roberto | Petagine | MLB |
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| 35 | 8 | 824 | 1995 | Inaugural Draft | OF | Allen | Battle | MLB |
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| 36 | 17 | 857 | 1995 | Inaugural Draft | OF | Yamil | Benitez | MLB |
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| 37 | 8 | 872 | 1995 | Inaugural Draft | 2B | Doug | Brady | MLB |
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| 38 | 17 | 905 | 1995 | Inaugural Draft | P | Brian | Bark | MLB |
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| 39 | 8 | 920 | 1995 | Inaugural Draft | 1B | Todd | Benzinger | MLB |
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| 40 | 17 | 953 | 1995 | Inaugural Draft | P | Erik | Bennett | MLB |
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