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| First Round Draft Pick History |
| 1 | 5 | 5 | 2000 | Annual Draft | P | Barry | Zito | MLB |
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| 1 | 17 | 17 | 1999 | Annual Draft | P | Octavio | Dotel | MLB |
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| 1 | 17 | 17 | 1998 | Annual Draft | P | Ryan | Dempster | MLB |
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| 1 | 20 | 20 | 1997 | Annual Draft | SS | Orlando | Cabrera | MLB |
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| 1 | 23 | 23 | 1997 | Annual Draft | OF | Richard | Hidalgo | MLB |
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| 1 | 16 | 16 | 1996 | Annual Draft | OF | Raul | Ibanez | MLB |
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| 1 | 15 | 15 | 1995 | Inaugural Draft | P | Mike | Mussina | MLB |
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| Complete Draft History |
| 1 | 5 | 5 | 2000 | Annual Draft | P | Barry | Zito | MLB |
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| 2 | 5 | 29 | 2000 | Annual Draft | OF | Eric | Byrnes | MLB |
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| 3 | 6 | 54 | 2000 | Annual Draft | OF | Ross | Gload | MLB |
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| 4 | 5 | 77 | 2000 | Annual Draft | P | Tony | Fiore | MLB |
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| 5 | 6 | 102 | 2000 | Annual Draft | C+ | Josh | Paul | MLB |
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| 1 | 17 | 17 | 1999 | Annual Draft | P | Octavio | Dotel | MLB |
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| 2 | 17 | 41 | 1999 | Annual Draft | P | Mark | Redman | MLB |
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| 3 | 17 | 65 | 1999 | Annual Draft | 3B | Olmedo | Saenz | MLB |
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| 3 | 24 | 72 | 1999 | Annual Draft | OF | David | Roberts | MLB |
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| 4 | 17 | 89 | 1999 | Annual Draft | C | Ben | Petrick | MLB |
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| 4 | 24 | 96 | 1999 | Annual Draft | SS+ | Frank | Menechino | MLB |
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| 5 | 17 | 113 | 1999 | Annual Draft | 1B+ | Steve | Cox | MLB |
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| 5 | 24 | 120 | 1999 | Annual Draft | P | Willis | Roberts | MLB |
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| 6 | 17 | 137 | 1999 | Annual Draft | OF | Jeff | Liefer | MLB |
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| 1 | 17 | 17 | 1998 | Annual Draft | P | Ryan | Dempster | MLB |
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| 2 | 17 | 41 | 1998 | Annual Draft | 3B | Russ | Branyan | MLB |
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| 3 | 17 | 65 | 1998 | Annual Draft | OF | Jeremy | Giambi | MLB |
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| 4 | 17 | 89 | 1998 | Annual Draft | P | Brad | Clontz | MLB |
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| 5 | 17 | 113 | 1998 | Annual Draft | C | Mark | Johnson | MLB |
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| 6 | 17 | 137 | 1998 | Annual Draft | P | Bronswell | Patrick | MLB |
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| 1 | 20 | 20 | 1997 | Annual Draft | SS | Orlando | Cabrera | MLB |
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| 1 | 23 | 23 | 1997 | Annual Draft | OF | Richard | Hidalgo | MLB |
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| 2 | 20 | 44 | 1997 | Annual Draft | P | Tom | Martin | MLB |
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| 3 | 20 | 68 | 1997 | Annual Draft | P | Hideki | Irabu | MLB |
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| 4 | 20 | 92 | 1997 | Annual Draft | P | Curtis | King | MLB |
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| 5 | 20 | 116 | 1997 | Annual Draft | C | Mandy | Romero | MLB |
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| 1 | 16 | 16 | 1996 | Annual Draft | OF | Raul | Ibanez | MLB |
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| 2 | 16 | 40 | 1996 | Annual Draft | 1B | Lee | Stevens | MLB |
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| 3 | 16 | 64 | 1996 | Annual Draft | P | Garrett | Stephenson | MLB |
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| 4 | 16 | 88 | 1996 | Annual Draft | C | Raul | Casanova | MLB |
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| 5 | 16 | 112 | 1996 | Annual Draft | C | Bobby | Estalella | MLB |
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| 6 | 16 | 136 | 1996 | Annual Draft | OF | Tony | Barron | MLB |
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| 1 | 15 | 15 | 1995 | Inaugural Draft | P | Mike | Mussina | MLB |
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| 2 | 10 | 34 | 1995 | Inaugural Draft | 2B | Jeff | Kent | MLB |
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| 3 | 15 | 63 | 1995 | Inaugural Draft | P | Al | Leiter | MLB |
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| 4 | 10 | 82 | 1995 | Inaugural Draft | SS | John | Valentin | MLB |
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| 5 | 15 | 111 | 1995 | Inaugural Draft | OF | Brady | Anderson | MLB |
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| 6 | 10 | 130 | 1995 | Inaugural Draft | P | Tom | Gordon | MLB |
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| 7 | 15 | 159 | 1995 | Inaugural Draft | P | Jeff | Fassero | MLB |
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| 8 | 10 | 178 | 1995 | Inaugural Draft | C | Benito | Santiago | MLB |
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| 9 | 15 | 207 | 1995 | Inaugural Draft | OF | Bernard | Gilkey | MLB |
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| 10 | 10 | 226 | 1995 | Inaugural Draft | P | Roberto | Hernandez | MLB |
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| 11 | 15 | 255 | 1995 | Inaugural Draft | 2B | Randy | Velarde | MLB |
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| 12 | 10 | 274 | 1995 | Inaugural Draft | OF | Dave | Nilsson | MLB |
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| 13 | 15 | 303 | 1995 | Inaugural Draft | 1B | Paul | Molitor | MLB |
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| 14 | 10 | 322 | 1995 | Inaugural Draft | P | Julian | Tavarez | MLB |
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| 15 | 15 | 351 | 1995 | Inaugural Draft | P | Jeff | Brantley | MLB |
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| 16 | 10 | 370 | 1995 | Inaugural Draft | OF | Troy | O'Leary | MLB |
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| 17 | 15 | 399 | 1995 | Inaugural Draft | 3B+ | Bill | Spiers | MLB |
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| 18 | 10 | 418 | 1995 | Inaugural Draft | P | Norm | Charlton | MLB |
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| 19 | 15 | 447 | 1995 | Inaugural Draft | P | Fernando | Valenzuela | MLB |
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| 20 | 10 | 466 | 1995 | Inaugural Draft | 1B | Don | Mattingly | MLB |
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| 21 | 15 | 495 | 1995 | Inaugural Draft | OF | Gerald | Williams | MLB |
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| 22 | 10 | 514 | 1995 | Inaugural Draft | P | Matt | Karchner | MLB |
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| 23 | 15 | 543 | 1995 | Inaugural Draft | P | Robert | Person | MLB |
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| 24 | 10 | 562 | 1995 | Inaugural Draft | C | Lenny | Webster | MLB |
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| 25 | 15 | 591 | 1995 | Inaugural Draft | P | Jeff | Juden | MLB |
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| 26 | 10 | 610 | 1995 | Inaugural Draft | 1B+ | Juan | Samuel | MLB |
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| 27 | 15 | 639 | 1995 | Inaugural Draft | P | Mark | Brandenburg | MLB |
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| 28 | 10 | 658 | 1995 | Inaugural Draft | P | Marc | Valdes | MLB |
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| 29 | 15 | 687 | 1995 | Inaugural Draft | OF | Candy | Maldonado | MLB |
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| 30 | 10 | 706 | 1995 | Inaugural Draft | P | John | Hudek | MLB |
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| 31 | 15 | 735 | 1995 | Inaugural Draft | 1B+ | Archi | Cianfrocco | MLB |
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| 32 | 10 | 754 | 1995 | Inaugural Draft | P | Terrell | Wade | MLB |
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| 33 | 15 | 783 | 1995 | Inaugural Draft | P | Giovanni | Carrara | MLB |
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| 34 | 10 | 802 | 1995 | Inaugural Draft | P | Alan | Mills | MLB |
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| 35 | 15 | 831 | 1995 | Inaugural Draft | 1B+ | Brian R. | Hunter | MLB |
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| 36 | 10 | 850 | 1995 | Inaugural Draft | P | C.J. | Nitkowski | MLB |
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| 37 | 15 | 879 | 1995 | Inaugural Draft | OF | Sherman | Obando | MLB |
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| 38 | 10 | 898 | 1995 | Inaugural Draft | OF | Ricky | Otero | MLB |
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| 39 | 15 | 927 | 1995 | Inaugural Draft | 1B+ | Gene | Schall | MLB |
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| 40 | 10 | 946 | 1995 | Inaugural Draft | C | Rich | Rowland | MLB |
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