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| First Round Draft Pick History |
| 1 | 14 | 14 | 2001 | Annual Draft | SS | David | Eckstein | MLB |
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| 1 | 14 | 14 | 2000 | Annual Draft | P | Scott | Downs | MLB |
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| 1 | 11 | 11 | 1999 | Annual Draft | OF | Melvin | Mora | MLB |
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| 1 | 19 | 19 | 1998 | Annual Draft | OF | Geoff | Jenkins | MLB |
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| 1 | 14 | 14 | 1997 | Annual Draft | P | Keith | Foulke | MLB |
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| 1 | 9 | 9 | 1996 | Annual Draft | 3B | Bill | Mueller | MLB |
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| 1 | 4 | 4 | 1995 | Inaugural Draft | P | Randy | Johnson | MLB |
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| Complete Draft History |
| 1 | 14 | 14 | 2001 | Annual Draft | SS | David | Eckstein | MLB |
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| 2 | 14 | 38 | 2001 | Annual Draft | P | Danys | Baez | MLB |
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| 3 | 14 | 62 | 2001 | Annual Draft | P | Tim | Redding | MLB |
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| 4 | 14 | 86 | 2001 | Annual Draft | OF | Dustan | Mohr | MLB |
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| 5 | 14 | 110 | 2001 | Annual Draft | OF | Larry | Bigbie | MLB |
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| 6 | 14 | 134 | 2001 | Annual Draft | P | Tim | Spooneybarger | MLB |
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| 7 | 14 | 158 | 2001 | Annual Draft | P | Joe | Nelson | MLB |
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| 1 | 14 | 14 | 2000 | Annual Draft | P | Scott | Downs | MLB |
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| 2 | 14 | 38 | 2000 | Annual Draft | C | Josh | Phelps | MLB |
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| 3 | 14 | 62 | 2000 | Annual Draft | P | Derrick | Turnbow | MLB |
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| 4 | 14 | 86 | 2000 | Annual Draft | P | Jack | Cressend | MLB |
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| 5 | 14 | 110 | 2000 | Annual Draft | OF | Brian | Buchanan | MLB |
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| 6 | 14 | 134 | 2000 | Annual Draft | P | Gene | Stechschulte | MLB |
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| 7 | 14 | 158 | 2000 | Annual Draft | P | Matt | Blank | MLB |
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| 1 | 11 | 11 | 1999 | Annual Draft | OF | Melvin | Mora | MLB |
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| 2 | 11 | 35 | 1999 | Annual Draft | 1B | Erubiel | Durazo | MLB |
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| 3 | 11 | 59 | 1999 | Annual Draft | P | Ray | King | MLB |
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| 4 | 11 | 83 | 1999 | Annual Draft | 1B | Dave | Hansen | MLB |
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| 5 | 11 | 107 | 1999 | Annual Draft | C | Tom | Prince | MLB |
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| 6 | 11 | 131 | 1999 | Annual Draft | P | Jim | Abbott | MLB |
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| 1 | 19 | 19 | 1998 | Annual Draft | OF | Geoff | Jenkins | MLB |
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| 2 | 19 | 43 | 1998 | Annual Draft | P | Braden | Looper | MLB |
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| 3 | 19 | 67 | 1998 | Annual Draft | P | Brian | Shouse | MLB |
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| 4 | 19 | 91 | 1998 | Annual Draft | P | Bobby | Chouinard | MLB |
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| 5 | 19 | 115 | 1998 | Annual Draft | P | Bryan | Ward | MLB |
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| 6 | 19 | 139 | 1998 | Annual Draft | C+ | Tim | Spehr | MLB |
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| 7 | 19 | 163 | 1998 | Annual Draft | SS+ | Felix | Martinez | MLB |
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| 1 | 14 | 14 | 1997 | Annual Draft | P | Keith | Foulke | MLB |
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| 2 | 14 | 38 | 1997 | Annual Draft | 1B | Brad | Fullmer | MLB |
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| 3 | 14 | 62 | 1997 | Annual Draft | P | Aaron | Small | MLB |
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| 4 | 14 | 86 | 1997 | Annual Draft | P | Mike | Cather | MLB |
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| 5 | 14 | 110 | 1997 | Annual Draft | OF | Bruce | Aven | MLB |
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| 6 | 14 | 134 | 1997 | Annual Draft | P | Carlos | Almanzar | MLB |
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| 7 | 14 | 158 | 1997 | Annual Draft | C+ | Walt | McKeel | MLB |
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| 1 | 9 | 9 | 1996 | Annual Draft | 3B | Bill | Mueller | MLB |
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| 2 | 9 | 33 | 1996 | Annual Draft | 3B | Scott | Spiezio | MLB |
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| 3 | 9 | 57 | 1996 | Annual Draft | P | Bill | Taylor | MLB |
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| 4 | 9 | 81 | 1996 | Annual Draft | P | Dave | Telgheder | MLB |
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| 5 | 9 | 105 | 1996 | Annual Draft | P | Amaury | Telemaco | MLB |
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| 6 | 9 | 129 | 1996 | Annual Draft | 2B+ | Bill | Selby | MLB |
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| 7 | 9 | 153 | 1996 | Annual Draft | C | Julio | Mosquera | MLB |
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| 8 | 9 | 177 | 1996 | Annual Draft | OF | Alan | Cockrell | MLB |
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| 16 | 9 | 369 | 1996 | Annual Draft | 2B+ | Matt | Howard | MLB |
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| 1 | 4 | 4 | 1995 | Inaugural Draft | P | Randy | Johnson | MLB |
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| 2 | 21 | 45 | 1995 | Inaugural Draft | OF | Mike | Cameron | MLB |
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| 3 | 4 | 52 | 1995 | Inaugural Draft | OF | Johnny | Damon | MLB |
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| 4 | 21 | 93 | 1995 | Inaugural Draft | P | Jason | Schmidt | MLB |
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| 5 | 4 | 100 | 1995 | Inaugural Draft | P | Jon | Lieber | MLB |
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| 6 | 21 | 141 | 1995 | Inaugural Draft | P | John | Burkett | MLB |
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| 7 | 4 | 148 | 1995 | Inaugural Draft | OF | Brian | Jordan | MLB |
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| 8 | 21 | 189 | 1995 | Inaugural Draft | P | Esteban | Loaiza | MLB |
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| 9 | 4 | 196 | 1995 | Inaugural Draft | SS+ | Mark | Grudzielanek | MLB |
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| 10 | 21 | 237 | 1995 | Inaugural Draft | P | Pedro | Astacio | MLB |
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| 11 | 4 | 244 | 1995 | Inaugural Draft | P | Dave | Burba | MLB |
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| 12 | 21 | 285 | 1995 | Inaugural Draft | C | Greg | Zaun | MLB |
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| 13 | 4 | 292 | 1995 | Inaugural Draft | P | Paul | Byrd | MLB |
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| 14 | 21 | 333 | 1995 | Inaugural Draft | 2B+ | David | Bell | MLB |
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| 15 | 4 | 340 | 1995 | Inaugural Draft | P | Rick | Helling | MLB |
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| 16 | 21 | 381 | 1995 | Inaugural Draft | P | Terry | Adams | MLB |
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| 17 | 4 | 388 | 1995 | Inaugural Draft | OF | Michael | Tucker | MLB |
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| 18 | 21 | 429 | 1995 | Inaugural Draft | P | Gil | Heredia | MLB |
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| 19 | 4 | 436 | 1995 | Inaugural Draft | OF | Brian L. | Hunter | MLB |
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| 20 | 21 | 477 | 1995 | Inaugural Draft | OF | F.P. | Santangelo | MLB |
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| 21 | 4 | 484 | 1995 | Inaugural Draft | 1B | Scott | Stahoviak | MLB |
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| 22 | 21 | 525 | 1995 | Inaugural Draft | OF | Darren | Bragg | MLB |
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| 23 | 4 | 532 | 1995 | Inaugural Draft | C+ | Rick | Wilkins | MLB |
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| 24 | 21 | 573 | 1995 | Inaugural Draft | 1B | Mark | Johnson | MLB |
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| 25 | 4 | 580 | 1995 | Inaugural Draft | 3B | Shane | Andrews | MLB |
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| 26 | 21 | 621 | 1995 | Inaugural Draft | P | Tim | Scott | MLB |
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| 27 | 4 | 628 | 1995 | Inaugural Draft | P | Randy | Veres | MLB |
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| 28 | 21 | 669 | 1995 | Inaugural Draft | P | Mike | Mohler | MLB |
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| 29 | 4 | 676 | 1995 | Inaugural Draft | OF | Lenny | Dykstra | MLB |
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| 30 | 21 | 717 | 1995 | Inaugural Draft | P | Rich | Robertson | MLB |
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| 31 | 4 | 724 | 1995 | Inaugural Draft | P | Don | Wengert | MLB |
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| 32 | 21 | 765 | 1995 | Inaugural Draft | C | Damon | Berryhill | MLB |
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| 33 | 4 | 772 | 1995 | Inaugural Draft | SS | Ray | Holbert | MLB |
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| 34 | 21 | 813 | 1995 | Inaugural Draft | 3B | Howard | Battle | MLB |
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| 35 | 4 | 820 | 1995 | Inaugural Draft | OF | Rick | Parker | MLB |
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| 36 | 21 | 861 | 1995 | Inaugural Draft | OF+ | Lou | Frazier | MLB |
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| 37 | 4 | 868 | 1995 | Inaugural Draft | 2B | Ramon | Caraballo | MLB |
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| 38 | 21 | 909 | 1995 | Inaugural Draft | OF+ | Phil | Clark | MLB |
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| 39 | 4 | 916 | 1995 | Inaugural Draft | OF+ | Jimmy | Tatum | MLB |
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| 40 | 21 | 957 | 1995 | Inaugural Draft | 3B | Garey | Ingram | MLB |
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